Package: g3viz 1.2.0

Xin Guo

g3viz: Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

Interface for 'g3-lollipop' 'JavaScript' library. Visualize genetic mutation data using an interactive lollipop diagram in 'RStudio' or your web browser.

Authors:Xin Guo [aut, cre], Rener Zhang [ctb], Ruining Zhu [ctb], Feng Zhao [ctb]

g3viz_1.2.0.tar.gz
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g3viz_1.2.0.tgz(r-4.4-any)g3viz_1.2.0.tgz(r-4.3-any)
g3viz_1.2.0.tar.gz(r-4.5-noble)g3viz_1.2.0.tar.gz(r-4.4-noble)
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g3viz.pdf |g3viz.html
g3viz/json (API)
NEWS

# Install 'g3viz' in R:
install.packages('g3viz', repos = c('https://g3viz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/g3viz/g3viz/issues

Datasets:
  • hgnc2pfam.df - Mapping table between gene.symbol, uniprot.id, and pfam
  • mutation.table.df - Default mapping table between mutation type (aka, variant classification) to mutation class

On CRAN:

bioinformaticsgenomics-visualizationlollipop-plotvariantsvisualize-mutation-data

5.58 score 29 stars 22 scripts 377 downloads 3 mentions 13 exports 62 dependencies

Last updated 2 months agofrom:fa6d3d80ed. Checks:OK: 6 WARNING: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 09 2024
R-4.5-winOKNov 09 2024
R-4.5-linuxWARNINGNov 09 2024
R-4.4-winOKNov 09 2024
R-4.4-macOKNov 09 2024
R-4.3-winOKNov 09 2024
R-4.3-macOKNov 09 2024

Exports:g3Lollipopg3Lollipop.optionsg3Lollipop.themeg3LollipopOutputgetMutationsFromCbioportalguessMAFColumnNamehgnc2pfamhgnc2uniprotmapMutationTypeToMutationClassparseProteinChangereadMAFrenderG3Lollipopuniprot2pfam

Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemclicpp11crayoncurlDBIdigestevaluatefastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDatagluehighrhtmltoolshtmlwidgetshttrhttr2IRangesjquerylibjsonliteKEGGRESTknitrlifecyclemagrittrmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrpngR6rappdirsrlangrmarkdownRSQLiteS4VectorssassstringistringrsystinytexUCSC.utilsvctrswithrxfunXVectoryamlzlibbioc